title: Argos public and test servers date: 8 May 04 url: http://eugenes.org:8081/install/work/argos-services-may04.txt url: rsync://flybase.net/argos/install/work/argos-services-may04.txt readme-first: http://flybase.net:8081/install/ Readme-current.txt and argos-system-management.txt info: Management scripts are in {argos}/ROOT/bin/ with configs in ROOT/conf/ unless noted. {argos}ROOT/bin/run- are primary server start/stop management scripts, {argos}ROOT/bin/argosweb-start.sh can be adapted as system /etc/init.d/ start/stop script Ports and paths are configured in {argos}/install/install.conf.local unless noted Server Process IDs and logs are in {argos}/logs/ unless noted. Hosts at .bio.indiana.edu unless noted HOST:ARGOS_ROOT Path Function Start/Stop method Network Ports # ============================================================================== # Service: FlyBase # ---------------------------------------------------------------- A. rail:/bio/biodb/ primary public distribution server, see rsync rsync://flybase.net/argos/ see also rsync://flybase.net/ {flybaseftp,flybasecvs} rsync://flybase.net/{fbdata1,fbdata2} are parts inside flybaseftp; add {genome-dmel} ?? (rsync only, no other network service running on this root; added as /argos/ to anon. ftp) B. rail:/bio/biodb/flybaseng/ (symlink to /a1/fb/pub/flybaseng/) primary public http server http://flybase.net sudo -u root {argos}/install/run-apache start|stop|restart|graceful|status sudo -u fbadmin {argos}/install/run-tomcat start|stop|restart daily crontasks: install/run-tomcat restart system restart: rail:/etc/init.d/argosweb apache ports: 80, 7084, ...; argos-apache: 8081 tomcat ports: two apache servers handle flybase.net, both managed by run-apache script B1. port 80 only - streamlined for high traffic main service (ROOT/conf/flybase-80.conf) B2. ports 8081, 82, 7084, 7082 - redirections and argos (ROOT/conf/flybase-8081.conf) # clone flybase public servers ------- C1. chervil:/bio/biodb/ clone public http server to http://flybase.net ; rsync'd daily using install/update from (A) sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: install/run-apache graceful system restart: none apache ports: 7082, argos apache port: 8081 tomcat ports: C2. bugbane:/bio/biodb/ clone public http server to http://flybase.net ; rsync'd daily from (C1) { same as C1 } C3. cane:/bio/biodb/ clone public http server to http://flybase.net ; rsync'd daily from (C1) { same as C1 } # extra flybase public/test servers ------- D1. chervil:/d2/bio/argos/ test http server to http://flybase.net ; rsync'd weekly from (A) sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: install/run-apache graceful system restart: none fb apache port: 17082; argos apache port: 18081 tomcat ports: 17882 (fb servlets), 17880 (admin) D2. chervil:/d2/bio/argos/ test postgres chado db server sudo -u argosadm {argos}/install/run-postgres start|stop|restart|reload|status daily crontasks: none system restart: none pg port: 17302 D3. bugbane:/d2/bio/argos/ test http server to http://flybase.net ; rsync'd daily using install/update from (A) sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: none system restart: none fb apache port: 17082; argos apache port: 18081 tomcat ports: 17882 (fb servlets), 17880 (admin), 17884 (https) D4. bugbane:/d2/bio/argos/flybase-prerelease/ public pre-release http server to http://flybase.net ; prepared as needed by-hand sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: none system restart: none fb apache port: 7092; (runs inside /d2/bio/argos server) tomcat ports: 17882 (fb servlets) D5. bugbane:/d2/bio/argos/ public (preliminary) postgres chado db server sudo -u argosadm {argos}/install/run-postgres start|stop|restart|reload|status daily crontasks: none system restart: none pg port: 7302 D6. bugbane:/d2/bio/argos/ fly species http server sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: none system restart: none apache port: 7151; argos apache port: 18081 tomcat ports: 7154 (fb servlets), 7155 (https) # archive flybase public servers ------- E1. rail:/a1/fb/pub/fb1/ Archived public flybase server: October 2003 { httpd runs from /etc/inetd.conf } daily crontasks: none? system restart: none apache ports: 708? tomcat ports: E2. cane:/d3/bio/biodb.nov03/ Archived public flybase server: December 2003 sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: apache restart system restart: none apache ports: ????, argos apache port: ???? tomcat ports: ????, E3. cane:/d3/bio/argos.feb04/ Archived public flybase server: Feb 2004 sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: apache restart system restart: none apache ports: 7042 [flybase], argos apache port: 7041 tomcat ports: 7043, 7044 E4. cane:/d3/bio/argos.aug04/ Archived public flybase server: Aug 2004 sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: apache restart system restart: none apache ports: 7052 [flybase], argos apache port: 7051 tomcat ports: 7053, 7054 E5. cane:/d3/bio/argos.nov04/ Archived public flybase server: Nov 2004 sudo -u argosadm {argos}/install/run-apache start|stop|restart|graceful|status sudo -u argosadm {argos}/install/run-tomcat start|stop|restart daily crontasks: apache restart system restart: none apache ports: 7062 [flybase], argos apache port: 7061 tomcat ports: 7063, 7064, 7065, 7066 perl -pi.old -e's,/bio/biodb,/d3/bio/argos.nov04,g; s,\b8081\b,7061,g; s,\b7082\b,7062,g;' \ -e 's,\b7882\b,7063,g; s,\b7884\b,7064,g; s,\b7885\b,7065,g; s,\b7886\b,7066,g;' \ install/install.conf.local ROOT/conf/apache.conf flybase/conf/apache.conf flybase/conf/tomcat-server.xml -- for flybase-archive/ folder; main apache.conf RewriteRule ^/flybase-archive/200411/?(.*) http://cane.bio.indiana.edu:7062/$1 [R,L] AddDescription "FlyBase Preview server" preview AddDescription "Drosophila Species Genomes preview" species AddDescription "2004 November FlyBase Archive" 200411 AddDescription "2004 August FlyBase Archive" 200408 AddDescription "2004 February FlyBase Archive" 200402 AddDescription "2003 December FlyBase Archive" 200312 AddDescription "2003 October FlyBase Archive" 200310 Put archive notice in header: flybase/conf/apache.conf and header.html, ... SetEnv FB_FRONTPAGEHEADER "FlyBase Archive server: last updated November 2004" F. firefly: (? obsolete, can use for network relay, tests, other non-cpu tasks) # Service: FlyBase mirrors G: fbserver.gen.cam.ac.uk:80/... H: flybase.harvard.edu:/... J: .. nig.jp:/.. # Service: Argos common # ---------------------------------------------------------------- { all iubio argos services run under 1 apache server instance } Iap. iubio:/bio/biodb/ Argos services, common apache httpd sudo -u root {argos}/install/run-apache start|stop|restart|graceful|status system restart: iubio:/etc/init.d/argosweb Ipg. iubio:/bio/biodb/ public postgres chado db server (wFleaBase, ...) sudo -u argosadm {argos}/install/run-postgres start|stop|restart|reload|status daily crontasks: none system restart: none pg port: 7302 main indices: {argos}/ROOT/indices/pgsql # Service: euGenes # ---------------------------------------------------------------- I1. iubio:/bio/biodb/eugenes/ primary public server http://eugenes.org/ sudo -u argosadm {argos}/install/run-tomcat -s eugenes start|stop|restart apache ports: 7072; common argos-apache: 8081 tomcat ports: 7872 # Service: wFleaBase # ---------------------------------------------------------------- I2. iubio:/bio/biodb/daphnia/ (symlink) primary public server http://eugenes.org/dapnia/ sudo -u argosadm {argos}/install/run-tomcat -s daphnia start|stop|restart apache ports: 7062; common argos-apache: 8081 tomcat ports: 7862 I3. iubio:/bio/biodb/daphnia-work/ (symlink) test server for http://eugenes.org/dapnia/ sudo -u argosadm {argos}/install/run-tomcat -s daphnia-work start|stop|restart apache ports: 17182; common argos-apache: 8081 tomcat ports: 17183 # Service: IUBio # ---------------------------------------------------------------- I4. iubio:/bio/biodb/iubio/ Preliminary iubio.bio.indiana.edu replacement server (iubio:) apache ports: 7131; common argos-apache: 8081 tomcat ports: # Service: Bio-Mirror # ---------------------------------------------------------------- I5. iubio:/bio/biodb/biomirror/ Preliminary bio-mirror.net replacement server (iubio:) apache ports: 7121; common argos-apache: 8081 tomcat ports: # Service: GMOD # ---------------------------------------------------------------- I6. iubio:/bio/biodb/gmod/ Work/test services for GMOD project (iubio:) apache ports: 7122; common argos-apache: 8081 tomcat ports: # Service: CentaurBase # ---------------------------------------------------------------- I7. iubio:/bio/biodb/centaurbase/ Example Argos service; running on iubio: apache ports: 7112; common argos-apache: 8081 tomcat ports: 7113 # Service: GIL # ---------------------------------------------------------------- I8. iubio:/bio/biodb/gil/ Genome Informatics Lab web service apache ports: 7141; common argos-apache: 8081 tomcat ports: # ============================================================================== RewriteRule ^/flybase-archive/200408/?(.*) http://cane.bio.indiana.edu:7052/$1 [R,L] RewriteRule ^/flybase-archive/200411/?(.*) http://cane.bio.indiana.edu:7062/$1 [R,L] RewriteRule ^/flybase-archive/preview/?(.*) http://bugbane.bio.indiana.edu:7092/$1 [R,L] RewriteRule ^/flybase-archive/species/?(.*) http://bugbane.bio.indiana.edu:7151/$1 [R,L]