Toward a Unified Gene Page
-- GMOD Gene Page Working Group
Test this gene page scraper:
cgi-bin/ugpscraper.cgi
Name Last modified Size Description
Parent Directory 12-Jan-2010 15:36 -
bin/ 02-Sep-2007 22:28 -
cam-gene-web-apr04/ 07-May-2004 12:36 -
cam-gene-xml/ 07-Jun-2004 13:22 -
cgi-bin/ 13-Jun-2004 10:21 -
conf/ 07-Oct-2004 12:23 -
doc/ 02-Feb-2005 11:44 -
lib/ 26-Jun-2004 18:22 -
rsync.exclude 07-Oct-2004 14:59 1k
test-gene-xml/ 08-Sep-2004 18:31 -
README for GMOD Gene Page Working Group
------------------------------------------------
Model organism/genome databases (MODs) produce gene pages of similar
gene data, and may benefit from looking at unifying these to common
structure, labelling, etc. This folder has GMOD Gene Page working group
documents.
doc/
GenePage-WG1.txt -- working group doc 1 (May 04) [README second]
UnifiedGenePage.doc -- summary document
gmod-gener-apr04.ppt -- slide show for GMOD Apr 04 talk
cam-gene-web-apr04/ - sample gene pages (Apr 04)
cam-gene-xml/ - sample XML derived from these, by hand, with some
editorial simplification (dgg)
cgi-bin/
ugpscraper - test case#1 unified gene page scraper (reads HTML file or URL
from sample MODs, writes UGP XML)
-- command line operation; will add CGI version
conf/
Sample DTD, XSL, CSS files for producing common XML, and web pages
(used by ugpscraper)
lib/GenePageScraper.pm
- perl mod with logic for converting MOD gene pages to XML
XML/ - some additional perl XML tools (?not all required by above)
images/
- some gifs of gene pages
test-gene-xml/
- alternate and preliminary gene xml, and xslt for web page display