# meow.it for srs $dbInfo={ creDate: |28-Nov-1999 | -- PRELIMINARY description: | Model Eukaryotic Organism Workshop (MEOW) Genes database |
|A goal of MEOW Genes data is to establish a common
|summary for the major model eukaryotic organism databases.
|
| This summary should include
|*Valid terms:
| -Gene symbol
| -Gene full name
| -Gene identifier number
|*Synonyms:
| -Symbol synonyms
| -Full name synonyms
| -Secondary gene identifier numbers
|*Map location information:
| -Chromosome and genetic map position
| -Molecular map information (simple graphic of DNA length,
| encoded transcript(s) and CDS(s) if available)
|*Gene product information:
| -Functional information (from function ontology if available)
| -Structural information (from InterProt)
| -Homology information with other "MEOW" organisms
|*Links to extended gene information in the specialty model organism DBs.
|*Brief free text gene summary (a few lines at most).
|
| Sources of data
| MEOW data is automatically updated from sources.
|Mouse: MGD;
| WWW site: http://www.informatics.jax.org/
| Data: ftp://ftp.informatics.jax.org/pub/informatics/reports/ -- various
|Drosophila: FlyBase;
| WWW site: http://flybase.bio.indiana.edu/
| Data: ftp://fbarchive:FlyBase@flybase.net/data-archive/acode/data/FBgn.acode
|Zebrafish: ZFIN
| WWW site: http://zfish.uoregon.edu/ZFIN/
| Data:
|Arabidopsis: AtDB;
| WWW site: http://genome-www.stanford.edu/Arabidopsis/
| Data: ftp://genome-ftp.stanford.edu/pub/arabidopsis/ -- various
|Saccharomyces: SGD & YPD;
| WWW sites: http://www.proteome.com/YPDhome.html
| http://genome-www.stanford.edu/Saccharomyces/
| Data: ftp://genome-ftp.stanford.edu/pub/yeast/ -- various esp. from
| registry.genenames.tab and ORF tables
|C. elegans: ACeDB;
| WWW sites: http://stein.cshl.org/elegans/
| http://alpha.crbm.cnrs-mop.fr/cgi-bin/ace/simple/elegans/
| http://wormsrv1.sanger.ac.uk/
| Data: ftp://ncbi.nlm.nih.gov/repository/acedb/celegans/database*
|Human: NCBI LocusLink;
| WWW sites: http://www.ncbi.nlm.nih.gov/LocusLink/
| Data: ftp://ncbi.nlm.nih.gov/refseq/LocusLink/LL_tmpl
|
contact:
|Don Gilbert
email:
|meow@iubio.bio.indiana.edu
www:
|\
|http://iubio.bio.indiana.edu/meow/
ftp:
|\
|ftp://meow:meow@iubio.bio.indiana.edu/meow/archive/data/
## add acode field tags and labels !
fields:{
ID:
|MEOW local ID
DID:
|Database ID in originating database
FBSymbol:
|Gene symbol
GeneName:
|Full gene or locus name
Organism:
|Species
Synonyms:
|Synonyms of symbol or name
FBPhenotype:
|Information on phenotypic expression of gene
FBGeneLoc:
|Gene map position
FBFunction:
|Function of gene
EnzymeCode:
|EC enzyme code
}
}