# meow.i for srs
# for acode format data MEOW data .acode
# d.gilbert, nov'99
# ? change name to MEOWGENES ?


MEOWGENES_DB:$library:[ MEOWGENES group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{  
		$file:ATgn   $file:FBgn   $file:MGgn   $file:ZFgn
		$file:CEgn   $file:HUgn   $file:SGgn
		$file:AGgn   $file:RNgn
		}
]

FBGN_DB:$library:[ FBGN group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{ $file:FBgn }
]
AGGN_DB:$library:[ AGGN group:@GENOME_LIBS format:@MEOW_FORMAT
        cachesize:1024
        ifiles:{ "meow.i" "meow.is" }
        files:{ $file:AGgn }
]

HUGN_DB:$library:[ HUGN group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{ $file:HUgn }
]
MGGN_DB:$library:[ MGGN group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{ $file:MGgn }
]
ATGN_DB:$library:[ ATGN group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{ $file:ATgn }
]
CEGN_DB:$library:[ CEGN group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{ $file:CEgn }
]
SGGN_DB:$library:[ SGGN group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{ $file:SGgn }
]
ZFGN_DB:$library:[ ZFGN group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{ $file:ZFgn }
]
RNGN_DB:$library:[ RNGN group:@GENOME_LIBS format:@MEOW_FORMAT	
	cachesize:1024
	ifiles:{ "meow.i" "meow.is" }
	files:{ $file:RNgn }
]


MEOW_FORMAT:
	$libformat:[fileType:@ACODE_FILE syntax:@MEOW_SYNTAX tableFormat:left 
  fields:{

 		$field:[@DF_ALL]  
    $field:[@DF_FBSymbol 	index:str code:SYM	indexToken:SYM]
    $field:[@DF_Organism 	index:str code:ORG 	indexToken:ORG]
    $field:[@DF_GeneName 	index:str code:NAM 	indexToken:NAM]
    $field:[@DF_Synonyms 	index:str code:synonyms indexToken:synonyms ]

    $field:[@DF_FBFunction 	index:str code:functions indexToken:functions ]
  	$field:[@DF_EnzymeCode 	index:str code:{ENZ ECNUM TERM} 	indexToken:ENZ] 
    $field:[@DF_FBPhenotype 	index:str code:phenotypes 	indexToken:phenotypes ]
  	$field:[@DF_FBHomologue 	index:str code:{HG ORG SYM DBL}  indexToken:HG] 

    $field:[@DF_ChrsNo 		 index:str 	code:CHR indexToken:CHR] # want :int
    $field:[@DF_FBGeneLoc	index:str 	code:MAP indexToken:MAP] # want :int
    $field:[@DF_Date 		index:int code:DT	indexToken:DT]
		
  	$field:[@DF_AccessionKey 	index:str code:accessions indexToken:accessions ]
  	$field:[@DF_Class 	index:str code:CLA 	indexToken:CLA] 

    ## allids not for meow:
    ##  $field:[@DF_FBSecAccession 	index:str code:allids  indexToken:allids]
    
    ## ? drop CS case-sense flds?
    ## $field:[@DF_FBSymbolCS 	index:str code:SYM	indexToken:SYM_CS]
    ## $field:[@DF_FBSynonymsCS 	index:str code:{SYM SYN} indexToken:SYN_CS]
    ## $field:[@DF_Reference	index:str code:REFM	indexToken:REFM]
    ## $field:[@DF_FBKbLoc index:int code:KLOC 	indexToken:KLOC ]

    $field:[@DF_FBOtherFields	index:str  code:allwords indexToken:allwords]
    $field:[@DF_ID 	index:ID  code:ID indexToken:ID]  #? code:ID	

 	# $field:[@DF_LINK  index:link 	code:link indexToken:link]
    $field:[@DF_LINK tableToken:alllinks]

  }
]


MEOW_SYNTAX:$syntax:[file:"SRSDB:meow.is"]

##! add links among meow parts via @DF_FBHomologue
# $link:[@MEOWGENES_DB to:@MEOWGENES_DB fromField:@DF_FBHomologue toField:@DF_FBSymbol]
# $link:[@MEOWGENES_DB to:@MEOWGENES_DB fromField:@DF_FBHomologue toField:@DF_AccessionKey]
# $link:[@MEOWGENES_DB to:@MEOWGENES_DB fromField:@DF_AccessionKey toField:@DF_AccessionKey]
## ditto for FBGN_DB HUGN_DB MGGN_DB ATGN_DB CEGN_DB SGGN_DB ZFGN_DB

$link:[@MEOWGENES_DB to:@?ENZYME_DB token:'ENZ|ECNUM' toField:@DF_ID]
$link:[@MEOWGENES_DB to:@?EMBL_DB token:'accessions|EMBL' toField:@DF_Accession]
$link:[@MEOWGENES_DB to:@?GENBANK_DB token:'accessions|EMBL' toField:@DF_Accession]
$link:[@MEOWGENES_DB to:@?PIR_DB token:'accessions|PIR' toField:@DF_Accession]
$link:[@MEOWGENES_DB to:@?SWISSPROT_DB token:'accessions|SWISSPROT' toField:@DF_Accession]
$link:[@MEOWGENES_DB to:@?TREMBL_DB token:'accessions|TREMBL' toField:@DF_Accession]
$link:[@MEOWGENES_DB to:@?PROSITE_DB  token:'accessions|PROSITE' toField:@DF_Accession]
$link:[@MEOWGENES_DB to:@?PFAM_DB  token:'accessions|PFAM' toField:@DF_Accession]
$link:[@MEOWGENES_DB to:@?OMIM_DB token:'accessions|OMIM' toField:@DF_ID]
$link:[@MEOWGENES_DB to:@?GDB_DB token:'accessions|GDB' toField:@DF_Accession]
$link:[@MEOWGENES_DB to:@?HSAGENES_DB  fromField:@DF_GeneName toField:@DF_GeneName]
$link:[@MEOWGENES_DB to:@?TAXONOMY_DB fromField:@DF_Organism toField:@DF_Species]

## other links - FLYBASE: MGI: GDB: CARDS:

# data filetype -- see srsgen.i
#  ACODE_FILE:$filetype:[text typename:acode maxline:1024]