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Sample Configuration Files

This directory contains sample configuration files for GBrowse. To use them, simply copy them into gbrowse.conf, and edit the name of the database, username and password to reflect your database set up:

db_args       = -adaptor dbi::mysqlopt 
	        -dsn     dbi:mysql:database=fly;host=localhost
                                            ^^^change this
user          = nobody
                ^^^^^^ and this
pass          = secret
                ^^^^^^ and this

01.yeast.conf

Saccharomyces cerevisiae from SGD

02.wormbase.conf

Caenorhabditis elegans from WormBase

03.fly.conf

Drosophila melanogaster from FlyBase/BDGP

04.human.conf

Homo sapiens from various sources (download from www.gmod.org)

05.embl.conf

A proxy that automatically downloads whole accessions from Genbank/EMBL

06.biosql.conf

Sample configuration file for users of BioSQL

07.chado.conf

Sample configuration file for users of Chado

08.genbank.conf

Sample configuration file for data converted from GenBank/EMBL format using the bp_genbank2gff.pl script.