Inparanoid: Homologous Genes Summary Table August-2005 Minimum bit score: 50 Minimum percent identity: 50 % Total number of homologous protein sequences Human Chimp Dog Mouse Rat Chicken Pufferfish (Fugu) Zebrafish Fruitfly (D.melano.) Mosquito Bee Worm (C.elegans) Worm (C.briggsae) Mustard weed Rice Soil amoeba (Dicty.) Yeast (S.cerev.) Bacteria (E.coli) All Nident Nseqs Human 0 17433 15869 15345 12235 11936 12495 11428 8894 9363 7603 8846 8292 6225 5808 5890 4346 1115 241256 22216 22216 Chimp 16818 0 13800 13259 10702 10460 10417 9840 7086 7100 6086 6895 6885 5123 4660 4868 3587 912 203913 21506 21506 Dog 15506 14032 0 14156 11351 11278 11479 10655 8225 8125 6964 7966 7454 5504 5046 5492 3924 1001 219949 18201 18201 Mouse 15180 13677 14373 0 11691 10849 11744 10995 8830 8753 6521 8143 8172 5094 4562 4645 3495 991 206104 18941 18941 Rat 11746 10644 11175 11543 0 8821 8848 8241 6320 6281 5411 4779 5790 4132 3772 3866 2812 887 158632 13142 13142 Chicken 11405 10554 11102 10668 8899 0 9755 9119 6616 6553 5675 5940 5907 4262 3841 4156 2880 936 173724 17709 17709 Pufferfish (Fugu) 11441 10953 11251 11098 9283 10234 0 11155 8492 8453 7714 7923 8211 5529 4825 5071 3785 1135 205005 20796 20796 Zebrafish 12056 11644 11750 11269 10003 11010 12753 0 8748 8836 8002 8299 8526 5982 5507 5742 4034 1634 214366 23524 23524 Fruitfly (D.melano.) 6114 5819 6085 5895 5242 5530 6056 5512 0 7730 5661 5056 5019 3752 3426 3582 2745 975 122149 13472 13472 Mosquito 6246 5908 6086 5949 5287 5568 6077 5630 7950 0 5761 5157 5067 3877 3543 3574 2735 1132 128720 14364 14364 Bee 4593 4357 4502 4397 3928 4171 4482 4236 5155 5179 0 3676 3660 2537 2227 2493 1892 576 92400 9671 9671 Worm (C.elegans) 5614 5401 5572 5421 4000 5078 5468 5091 5227 5356 4399 0 14102 3946 3523 3570 2791 1019 116890 19764 19764 Worm (C.briggsae) 5512 5362 5618 5275 4882 5092 5549 5209 5243 5031 4428 13735 0 3971 3713 3651 2713 932 130708 19528 19528 Mustard weed 8943 8879 8732 8669 7667 7834 9044 8627 7844 7933 6425 7689 7571 0 15544 8263 6075 2767 199485 28860 28860 Rice 9873 9270 9121 9689 8588 8389 9006 8698 8558 8186 6751 7909 8774 14807 0 7922 5692 3862 209852 48467 48467 Soil amoeba (Dicty.) 4561 4389 4544 4344 3877 4184 4140 3959 3779 3988 3596 4248 3945 4521 4244 0 3198 1488 97789 13671 13671 Yeast (S.cerev.) 2512 2386 2496 2453 2143 2251 2475 2268 2346 2326 1901 2239 2227 2562 2243 2449 0 738 56881 5777 5777 Bacteria (E.coli) 697 635 673 654 609 637 671 650 628 905 549 607 616 915 910 690 602 0 16546 4242 4242 Number of protein sequences with one or more homologs (asymmetrical because blast query seq. is filtered) Human Chimp Dog Mouse Rat Chicken Pufferfish (Fugu) Zebrafish Fruitfly (D.melano.) Mosquito Bee Worm (C.elegans) Worm (C.briggsae) Mustard weed Rice Soil amoeba (Dicty.) Yeast (S.cerev.) Bacteria (E.coli) Any Nseqs Human 0 17433 15869 15345 12235 11936 12495 11428 8894 9363 7603 8846 8292 6225 5808 5890 4346 1115 0 22216 Chimp 16818 0 13800 13259 10702 10460 10417 9840 7086 7100 6086 6895 6885 5123 4660 4868 3587 912 0 21506 Dog 15506 14032 0 14156 11351 11278 11479 10655 8225 8125 6964 7966 7454 5504 5046 5492 3924 1001 0 18201 Mouse 15180 13677 14373 0 11691 10849 11744 10995 8830 8753 6521 8143 8172 5094 4562 4645 3495 991 0 18941 Rat 11746 10644 11175 11543 0 8821 8848 8241 6320 6281 5411 4779 5790 4132 3772 3866 2812 887 0 13142 Chicken 11405 10554 11102 10668 8899 0 9755 9119 6616 6553 5675 5940 5907 4262 3841 4156 2880 936 0 17709 Pufferfish (Fugu) 11441 10953 11251 11098 9283 10234 0 11155 8492 8453 7714 7923 8211 5529 4825 5071 3785 1135 0 20796 Zebrafish 12056 11644 11750 11269 10003 11010 12753 0 8748 8836 8002 8299 8526 5982 5507 5742 4034 1634 0 23524 Fruitfly (D.melano.) 6114 5819 6085 5895 5242 5530 6056 5512 0 7730 5661 5056 5019 3752 3426 3582 2745 975 0 13472 Mosquito 6246 5908 6086 5949 5287 5568 6077 5630 7950 0 5761 5157 5067 3877 3543 3574 2735 1132 0 14364 Bee 4593 4357 4502 4397 3928 4171 4482 4236 5155 5179 0 3676 3660 2537 2227 2493 1892 576 0 9671 Worm (C.elegans) 5614 5401 5572 5421 4000 5078 5468 5091 5227 5356 4399 0 14102 3946 3523 3570 2791 1019 0 19764 Worm (C.briggsae) 5512 5362 5618 5275 4882 5092 5549 5209 5243 5031 4428 13735 0 3971 3713 3651 2713 932 0 19528 Mustard weed 8943 8879 8732 8669 7667 7834 9044 8627 7844 7933 6425 7689 7571 0 15544 8263 6075 2767 0 28860 Rice 9873 9270 9121 9689 8588 8389 9006 8698 8558 8186 6751 7909 8774 14807 0 7922 5692 3862 0 48467 Soil amoeba (Dicty.) 4561 4389 4544 4344 3877 4184 4140 3959 3779 3988 3596 4248 3945 4521 4244 0 3198 1488 0 13671 Yeast (S.cerev.) 2512 2386 2496 2453 2143 2251 2475 2268 2346 2326 1901 2239 2227 2562 2243 2449 0 738 0 5777 Bacteria (E.coli) 697 635 673 654 609 637 671 650 628 905 549 607 616 915 910 690 602 0 0 4242 Percent of sequences with one or more homologs Human Chimp Dog Mouse Rat Chicken Pufferfish (Fugu) Zebrafish Fruitfly (D.melano.) Mosquito Bee Worm (C.elegans) Worm (C.briggsae) Mustard weed Rice Soil amoeba (Dicty.) Yeast (S.cerev.) Bacteria (E.coli) Any Human 0 78 71 69 55 53 56 51 40 42 34 39 37 28 26 26 19 5 0 Chimp 78 0 64 61 49 48 48 45 32 33 28 32 32 23 21 22 16 4 0 Dog 85 77 0 77 62 61 63 58 45 44 38 43 40 30 27 30 21 5 0 Mouse 80 72 75 0 61 57 62 58 46 46 34 42 43 26 24 24 18 5 0 Rat 89 80 85 87 0 67 67 62 48 47 41 36 44 31 28 29 21 6 0 Chicken 64 59 62 60 50 0 55 51 37 37 32 33 33 24 21 23 16 5 0 Pufferfish (Fugu) 55 52 54 53 44 49 0 53 40 40 37 38 39 26 23 24 18 5 0 Zebrafish 51 49 49 47 42 46 54 0 37 37 34 35 36 25 23 24 17 6 0 Fruitfly (D.melano.) 45 43 45 43 38 41 44 40 0 57 42 37 37 27 25 26 20 7 0 Mosquito 43 41 42 41 36 38 42 39 55 0 40 35 35 26 24 24 19 7 0 Bee 47 45 46 45 40 43 46 43 53 53 0 38 37 26 23 25 19 5 0 Worm (C.elegans) 28 27 28 27 20 25 27 25 26 27 22 0 71 19 17 18 14 5 0 Worm (C.briggsae) 28 27 28 27 25 26 28 26 26 25 22 70 0 20 19 18 13 4 0 Mustard weed 30 30 30 30 26 27 31 29 27 27 22 26 26 0 53 28 21 9 0 Rice 20 19 18 19 17 17 18 17 17 16 13 16 18 30 0 16 11 7 0 Soil amoeba (Dicty.) 33 32 33 31 28 30 30 28 27 29 26 31 28 33 31 0 23 10 0 Yeast (S.cerev.) 43 41 43 42 37 38 42 39 40 40 32 38 38 44 38 42 0 12 0 Bacteria (E.coli) 16 14 15 15 14 15 15 15 14 21 12 14 14 21 21 16 14 0 0 # Distance matrix of homologs (PHYLIP infile) 18 Hs_Human 0.00000 0.21664 0.21688 0.25392 0.27775 0.40935 0.44371 0.48655 0.57291 0.57185 0.59142 0.65888 0.67225 0.70496 0.76743 0.70062 0.68477 0.89275 Pt_Chimp 0.21664 0.00000 0.29369 0.33070 0.34622 0.45883 0.49447 0.52373 0.61929 0.62928 0.63324 0.70306 0.70264 0.72706 0.79603 0.72630 0.71010 0.90395 Cf_Dog 0.21688 0.29369 0.00000 0.23171 0.26301 0.37673 0.41415 0.45755 0.54821 0.56495 0.57593 0.64020 0.65139 0.69752 0.76729 0.68294 0.67617 0.89318 Mm_Mouse 0.25392 0.33070 0.23171 0.00000 0.25222 0.41241 0.42315 0.47024 0.54812 0.56186 0.60053 0.64790 0.64922 0.71534 0.77962 0.71851 0.69543 0.89675 Rr_Rat 0.27775 0.34622 0.26301 0.25222 0.00000 0.41314 0.44018 0.47385 0.56500 0.57700 0.59105 0.71698 0.65471 0.70996 0.76789 0.71112 0.70754 0.89447 Gg_Chicken 0.40935 0.45883 0.37673 0.41241 0.41314 0.00000 0.47852 0.50852 0.60796 0.62116 0.62413 0.70382 0.70284 0.74394 0.80501 0.72963 0.72386 0.89849 Fr_Pufferf 0.44371 0.49447 0.41415 0.42315 0.44018 0.47852 0.00000 0.46074 0.57106 0.58523 0.58281 0.67117 0.66050 0.71038 0.79108 0.72666 0.69479 0.89362 Dr_Zebrafi 0.48655 0.52373 0.45755 0.47024 0.47385 0.50852 0.46074 0.00000 0.60949 0.61622 0.61091 0.69481 0.68541 0.72339 0.79322 0.73316 0.71796 0.88865 Dm_Fruitfl 0.57291 0.61929 0.54821 0.54812 0.56500 0.60796 0.57106 0.60949 0.00000 0.43638 0.52338 0.68012 0.67948 0.72485 0.78456 0.72885 0.69508 0.88979 Ag_Mosquit 0.57185 0.62928 0.56495 0.56186 0.57700 0.62116 0.58523 0.61622 0.43638 0.00000 0.53170 0.68499 0.69481 0.72761 0.79222 0.72974 0.70348 0.85392 Am_Bee 0.59142 0.63324 0.57593 0.60053 0.59105 0.62413 0.58281 0.61091 0.52338 0.53170 0.00000 0.69866 0.69740 0.75752 0.81522 0.73959 0.73765 0.90551 Ce_Worm 0.65888 0.70306 0.64020 0.64790 0.71698 0.70382 0.67117 0.69481 0.68012 0.68499 0.69866 0.00000 0.29157 0.76696 0.82928 0.75432 0.73561 0.90267 Cb_Worm 0.67225 0.70264 0.65139 0.64922 0.65471 0.70284 0.66050 0.68541 0.67948 0.69481 0.69740 0.29157 0.00000 0.76716 0.81442 0.76224 0.73779 0.90353 At_Mustard 0.70496 0.72706 0.69752 0.71534 0.70996 0.74394 0.71038 0.72339 0.72485 0.72761 0.75752 0.76696 0.76716 0.00000 0.57795 0.69149 0.67301 0.84421 Og_Rice 0.76743 0.79603 0.76729 0.77962 0.76789 0.80501 0.79108 0.79322 0.78456 0.79222 0.81522 0.82928 0.81442 0.57795 0.00000 0.76306 0.74715 0.85290 Dd_Soil_am 0.70062 0.72630 0.68294 0.71851 0.71112 0.72963 0.72666 0.73316 0.72885 0.72974 0.73959 0.75432 0.76224 0.69149 0.76306 0.00000 0.67108 0.86425 Sc_Yeast 0.68477 0.71010 0.67617 0.69543 0.70754 0.72386 0.69479 0.71796 0.69508 0.70348 0.73765 0.73561 0.73779 0.67301 0.74715 0.67108 0.00000 0.86517 Ec_Bacteri 0.89275 0.90395 0.89318 0.89675 0.89447 0.89849 0.89362 0.88865 0.88979 0.85392 0.90551 0.90267 0.90353 0.84421 0.85290 0.86425 0.86517 0.00000