euGenes: Genome Features

euGenes: Genome Features euGenes .. Fish .. Fly .. Human .. Mouse .. Mosquito .. Rat .. Weed .. Worm .. Yeast

euGenes: Genome Sequence Features Summary Table

Common Features for all chromosomes

Count (n), base pair coverage (bp), and percent coverage (%) by features of genome sequences are given.

Organism > Feature	Fruitfly	Human	Mosquito	Weed	Worm	Yeast	All
CDS	14,191 n 43,065,815 bp 37.1 %	45,793 n 3,734,441,136 bp 120 %	12,703 n 55,258,453 bp 23.9 %	26,178 n 51,481,841 bp 43.8 %	20,453 n 59,057,136 bp 58.9 %	6,333 n 9,048,843 bp 74.4 %	125,651 n
LTR	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	42 n 4,945 bp 0.00493 %	385 n 130,832 bp 1.08 %	427 n
gene	13,340 n 47,557,984 bp 41 %	45,192 n 1,696,229,580 bp 54.4 %	12,706 n 96,336,810 bp 41.6 %	28,129 n 57,974,770 bp 49.4 %	24,221 n 162,397,476 bp 162 %	6,652 n 9,093,662 bp 74.8 %	130,240 n
insertions	3,693 n 3,693 bp 0.00318 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	185 n 24,178 bp 0.0241 %	0 n 0 bp 0 %	3,878 n
mRNA	14,197 n 52,726,179 bp 45.4 %	45,617 n 1,636,827,056 bp 52.5 %	0 n 0 bp 0 %	26,184 n 55,020,038 bp 46.9 %	20,952 n 59,614,430 bp 59.5 %	0 n 0 bp 0 %	106,950 n
misc_RNA	0 n 0 bp 0 %	28 n 277,445 bp 0.0089 %	0 n 0 bp 0 %	57 n 4,844 bp 0.00413 %	0 n 0 bp 0 %	70 n 13,941 bp 0.115 %	155 n
misc_feature	0 n 0 bp 0 %	9,334 n 1,001,599,403 bp 32.1 %	0 n 0 bp 0 %	3,151 n 133,183,739 bp 113 %	67 n 57,551 bp 0.0574 %	16 n 1,907 bp 0.0157 %	12,568 n
polyA_signal	0 n 0 bp 0 %	5 n 25 bp 8.02e-07 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 5 bp 4.99e-06 %	0 n 0 bp 0 %	6 n
polyA_site	0 n 0 bp 0 %	2 n 2 bp 6.41e-08 %	0 n 0 bp 0 %	0 n 0 bp 0 %	9 n 61 bp 6.08e-05 %	0 n 0 bp 0 %	11 n
rRNA	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	4 n 3,940 bp 0.00336 %	0 n 0 bp 0 %	16 n 29,802 bp 0.245 %	20 n
repeats	0 n 0 bp 0 %	49 n 12,632 bp 0.000405 %	136,146 n 17,178,913 bp 7.42 %	0 n 0 bp 0 %	97,268 n 23,877,861 bp 23.8 %	50 n 291,803 bp 2.4 %	233,513 n
segment	440 n 116,111,443 bp 100 %	1,657 n 2,827,897,959 bp 90.7 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	2,097 n
source	6 n 116,109,064 bp 100 %	24 n 3,118,899,592 bp 100 %	5 n 231,408,110 bp 100 %	5 n 117,429,173 bp 100 %	6 n 100,269,616 bp 100 %	17 n 12,156,289 bp 100 %	63 n
tRNA	289 n 21,567 bp 0.0186 %	1 n 71 bp 2.28e-06 %	0 n 0 bp 0 %	607 n 45,455 bp 0.0387 %	745 n 55,875 bp 0.0557 %	299 n 23,477 bp 0.193 %	1,941 n

Common features include these feature name changes or groupings from organism names (name-pattern => common-name):
*insertion* => insertions
*repeat* => repeats

All Features for each organism, per chromosome

Organism: Fruitfly

# Features for fly from FlyBase cytologic and sequence rel. 2 , 20020615

Chromosome > Feature	2L	2R	3L	3R	4	X	all
CDS	2,506 n 7,856,513 bp 35.6 %	2,819 n 8,542,485 bp 42.2 %	2,770 n 8,553,958 bp 36.9 %	3,551 n 10,263,693 bp 36.9 %	96 n 598,448 bp 51.8 %	2,449 n 7,250,718 bp 33.5 %	14,191 n 43,065,815 bp 37.1 %
bac	1,755 n 289,254,353 bp 1.31e+03 %	1,562 n 260,200,826 bp 1.29e+03 %	1,744 n 291,150,280 bp 1.26e+03 %	2,243 n 376,610,126 bp 1.36e+03 %	17 n 2,708,997 bp 234 %	1,126 n 187,242,100 bp 864 %	8,447 n 1,407,166,682 bp 1.21e+03 %
cDNA	1,181 n 642,292 bp 2.91 %	1,625 n 880,480 bp 4.35 %	1,222 n 691,914 bp 2.98 %	1,825 n 913,133 bp 3.29 %	54 n 25,150 bp 2.18 %	1,096 n 631,924 bp 2.92 %	7,003 n 3,784,893 bp 3.26 %
codon	1 n 2 bp 9.05e-06 %	0 n 0 bp 0 %	1 n 2 bp 8.62e-06 %	0 n 0 bp 0 %	1 n 2 bp 0.000173 %	3 n 6 bp 2.77e-05 %	6 n 12 bp 1.03e-05 %
gap	97 n 281,106 bp 1.27 %	89 n 279,722 bp 1.38 %	197 n 421,777 bp 1.82 %	132 n 284,130 bp 1.02 %	22 n 24,827 bp 2.15 %	611 n 432,288 bp 2 %	1,148 n 1,723,850 bp 1.48 %
gene	2,379 n 8,722,098 bp 39.5 %	2,617 n 9,335,213 bp 46.2 %	2,586 n 9,274,230 bp 40 %	3,359 n 11,637,854 bp 41.9 %	83 n 572,897 bp 49.6 %	2,316 n 8,015,692 bp 37 %	13,340 n 47,557,984 bp 41 %
mRNA	2,507 n 9,528,723 bp 43.1 %	2,819 n 10,696,464 bp 52.9 %	2,771 n 10,269,938 bp 44.3 %	3,551 n 12,870,800 bp 46.3 %	97 n 717,586 bp 62.1 %	2,452 n 8,642,668 bp 39.9 %	14,197 n 52,726,179 bp 45.4 %
p_insertion	761 n 761 bp 0.00344 %	942 n 942 bp 0.00466 %	645 n 645 bp 0.00278 %	827 n 827 bp 0.00298 %	1 n 1 bp 8.65e-05 %	517 n 517 bp 0.00239 %	3,693 n 3,693 bp 0.00318 %
segment	85 n 22,097,324 bp 100 %	76 n 20,219,748 bp 100 %	83 n 23,190,107 bp 100 %	118 n 27,782,940 bp 100 %	5 n 1,155,114 bp 99.9 %	73 n 21,666,210 bp 100 %	440 n 116,111,443 bp 100 %
source	1 n 22,097,676 bp 100 %	1 n 20,220,686 bp 100 %	1 n 23,190,496 bp 100 %	1 n 27,778,052 bp 100 %	1 n 1,155,938 bp 100 %	1 n 21,666,216 bp 100 %	6 n 116,109,064 bp 100 %
tRNA	36 n 2,659 bp 0.012 %	96 n 7,073 bp 0.035 %	50 n 3,766 bp 0.0162 %	81 n 6,072 bp 0.0219 %	0 n 0 bp 0 %	26 n 1,997 bp 0.00922 %	289 n 21,567 bp 0.0186 %

Organism: Human

# Features for man from NCBI H_sapiens data , 14-May-2002

Chromosome > Feature	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	X	Y	all
CDS	3,966 n 473,723,198 bp 193 %	3,523 n 460,326,080 bp 187 %	2,570 n 345,293,844 bp 169 %	2,168 n 318,274,704 bp 162 %	2,542 n 101,333,797 bp 53.5 %	2,637 n 106,198,014 bp 58.1 %	2,421 n 87,229,867 bp 54.4 %	2,025 n 96,038,232 bp 64.7 %	1,805 n 214,905,234 bp 166 %	2,149 n 294,198,809 bp 212 %	2,359 n 132,895,083 bp 99.1 %	2,038 n 168,397,437 bp 126 %	1,172 n 65,665,444 bp 57.8 %	1,436 n 151,597,763 bp 144 %	1,483 n 61,629,540 bp 61.6 %	1,683 n 195,522,187 bp 210 %	1,932 n 207,575,450 bp 256 %	1,019 n 39,795,632 bp 49.2 %	2,025 n 25,350,838 bp 34.7 %	1,152 n 32,307,963 bp 51.6 %	544 n 16,636,905 bp 35 %	993 n 18,084,397 bp 37.4 %	1,855 n 111,242,560 bp 73.3 %	296 n 10,218,158 bp 20.5 %	45,793 n 3,734,441,136 bp 120 %
C_region	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	7 n 2,186 bp 0.00452 %	0 n 0 bp 0 %	0 n 0 bp 0 %	7 n 2,186 bp 7.01e-05 %
J_segment	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	7 n 259 bp 0.000536 %	0 n 0 bp 0 %	0 n 0 bp 0 %	7 n 259 bp 8.3e-06 %
STS	10,334 n 1,958,392 bp 0.796 %	7,616 n 1,548,955 bp 0.628 %	6,490 n 1,310,945 bp 0.64 %	7,497 n 1,502,446 bp 0.763 %	6,081 n 1,226,796 bp 0.647 %	6,466 n 1,272,818 bp 0.696 %	7,125 n 1,290,425 bp 0.804 %	4,551 n 936,081 bp 0.631 %	3,916 n 787,930 bp 0.61 %	4,704 n 943,477 bp 0.681 %	5,643 n 1,137,922 bp 0.849 %	5,439 n 1,108,830 bp 0.826 %	2,828 n 585,410 bp 0.515 %	4,416 n 827,683 bp 0.785 %	3,149 n 621,670 bp 0.622 %	3,252 n 629,268 bp 0.675 %	3,806 n 731,010 bp 0.901 %	2,239 n 472,384 bp 0.584 %	2,611 n 476,358 bp 0.653 %	2,787 n 495,423 bp 0.792 %	1,711 n 337,492 bp 0.71 %	1,986 n 428,092 bp 0.886 %	5,216 n 1,116,681 bp 0.736 %	1,066 n 209,930 bp 0.421 %	110,929 n 21,956,418 bp 0.704 %
V_segment	0 n 0 bp 0 %	28 n 17,597 bp 0.00713 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	72 n 21,246 bp 0.044 %	0 n 0 bp 0 %	0 n 0 bp 0 %	100 n 38,843 bp 0.00125 %
exon	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 2,451 bp 0.00134 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	19 n 6,184 bp 0.00461 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	37 n 15,196 bp 0.032 %	0 n 0 bp 0 %	0 n 0 bp 0 %	3 n 458 bp 0.000918 %	60 n 24,289 bp 0.000779 %
gene	3,926 n 134,983,639 bp 54.9 %	3,485 n 145,815,693 bp 59.1 %	2,519 n 110,379,076 bp 53.9 %	2,146 n 105,585,293 bp 53.6 %	2,447 n 109,249,444 bp 57.6 %	2,616 n 104,162,914 bp 57 %	2,393 n 97,410,258 bp 60.7 %	1,991 n 84,654,408 bp 57 %	1,780 n 68,221,527 bp 52.8 %	2,118 n 83,900,429 bp 60.6 %	2,319 n 75,772,795 bp 56.5 %	1,995 n 74,151,913 bp 55.3 %	1,167 n 55,553,239 bp 48.9 %	1,423 n 53,377,876 bp 50.6 %	1,461 n 50,781,198 bp 50.8 %	1,667 n 50,268,099 bp 53.9 %	1,889 n 50,243,881 bp 61.9 %	1,009 n 44,857,318 bp 55.5 %	1,993 n 33,226,466 bp 45.5 %	1,179 n 38,025,852 bp 60.8 %	561 n 19,444,228 bp 40.9 %	978 n 21,940,565 bp 45.4 %	1,835 n 73,160,576 bp 48.2 %	295 n 11,062,893 bp 22.2 %	45,192 n 1,696,229,580 bp 54.4 %
mRNA	3,959 n 128,420,776 bp 52.2 %	3,501 n 142,185,022 bp 57.6 %	2,553 n 106,139,990 bp 51.8 %	2,162 n 102,341,423 bp 52 %	2,541 n 110,315,500 bp 58.2 %	2,639 n 100,697,944 bp 55.1 %	2,419 n 94,162,404 bp 58.7 %	2,018 n 82,581,135 bp 55.6 %	1,799 n 66,791,029 bp 51.7 %	2,145 n 81,810,600 bp 59.1 %	2,355 n 73,126,118 bp 54.5 %	2,029 n 70,147,864 bp 52.3 %	1,171 n 52,160,088 bp 45.9 %	1,433 n 50,726,013 bp 48.1 %	1,482 n 48,583,673 bp 48.6 %	1,685 n 47,826,076 bp 51.3 %	1,928 n 46,522,299 bp 57.4 %	1,015 n 43,578,039 bp 53.9 %	2,021 n 30,592,590 bp 41.9 %	1,155 n 37,077,545 bp 59.2 %	557 n 18,672,902 bp 39.3 %	905 n 21,406,604 bp 44.3 %	1,849 n 69,725,600 bp 45.9 %	296 n 11,235,822 bp 22.5 %	45,617 n 1,636,827,056 bp 52.5 %
misc_RNA	2 n 11,076 bp 0.0045 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 1,309 bp 0.000665 %	2 n 10,192 bp 0.00538 %	1 n 810 bp 0.000443 %	3 n 63,470 bp 0.0396 %	0 n 0 bp 0 %	2 n 4,196 bp 0.00325 %	1 n 2,940 bp 0.00212 %	2 n 12,211 bp 0.00911 %	0 n 0 bp 0 %	1 n 1,546 bp 0.00136 %	6 n 128,867 bp 0.122 %	1 n 863 bp 0.000863 %	0 n 0 bp 0 %	1 n 646 bp 0.000796 %	0 n 0 bp 0 %	2 n 2,736 bp 0.00375 %	1 n 31,984 bp 0.0511 %	1 n 1,890 bp 0.00398 %	0 n 0 bp 0 %	1 n 2,709 bp 0.00178 %	0 n 0 bp 0 %	28 n 277,445 bp 0.0089 %
misc_feature	1,106 n 155,644,579 bp 63.3 %	554 n 71,634,851 bp 29 %	340 n 78,878,285 bp 38.5 %	449 n 36,556,030 bp 18.6 %	325 n 26,662,048 bp 14.1 %	1,179 n 94,421,183 bp 51.6 %	328 n 18,035,918 bp 11.2 %	309 n 38,787,831 bp 26.1 %	356 n 42,612,606 bp 33 %	466 n 61,250,391 bp 44.2 %	368 n 58,958,889 bp 44 %	286 n 32,199,433 bp 24 %	295 n 30,971,650 bp 27.3 %	201 n 15,969,639 bp 15.2 %	255 n 28,039,397 bp 28 %	255 n 32,332,586 bp 34.7 %	145 n 17,064,593 bp 21 %	94 n 8,593,751 bp 10.6 %	116 n 7,026,855 bp 9.63 %	499 n 35,095,259 bp 56.1 %	72 n 4,932,714 bp 10.4 %	306 n 21,579,157 bp 44.7 %	915 n 81,125,134 bp 53.4 %	115 n 3,226,624 bp 6.47 %	9,334 n 1,001,599,403 bp 32.1 %
polyA_signal	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 5 bp 2.73e-06 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	3 n 15 bp 1.12e-05 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 5 bp 7.99e-06 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	5 n 25 bp 8.02e-07 %
polyA_site	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 1 bp 7.45e-07 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 1 bp 1.6e-06 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	2 n 2 bp 6.41e-08 %
prim_transcript	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 344 bp 0.000188 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 344 bp 1.1e-05 %
repeat_region	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 37 bp 1.88e-05 %	0 n 0 bp 0 %	8 n 1,394 bp 0.000762 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	5 n 699 bp 0.000521 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 545 bp 0.000672 %	0 n 0 bp 0 %	1 n 22 bp 3.01e-05 %	15 n 2,273 bp 0.00363 %	7 n 826 bp 0.00174 %	0 n 0 bp 0 %	3 n 280 bp 0.000184 %	6 n 6,536 bp 0.0131 %	47 n 12,612 bp 0.000404 %
repeat_unit	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	2 n 20 bp 1.49e-05 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	2 n 20 bp 6.41e-07 %
segment	127 n 221,683,603 bp 90.1 %	109 n 238,407,079 bp 96.6 %	217 n 187,956,610 bp 91.8 %	122 n 187,955,322 bp 95.4 %	105 n 181,420,454 bp 95.7 %	72 n 176,325,443 bp 96.4 %	40 n 155,556,987 bp 96.9 %	104 n 140,333,132 bp 94.5 %	48 n 112,819,189 bp 87.4 %	66 n 132,309,213 bp 95.5 %	75 n 127,428,189 bp 95 %	126 n 124,980,583 bp 93.1 %	13 n 96,014,607 bp 84.5 %	10 n 87,937,627 bp 83.4 %	48 n 79,670,111 bp 79.7 %	49 n 77,897,696 bp 83.5 %	49 n 75,762,243 bp 93.4 %	67 n 74,612,143 bp 92.3 %	57 n 56,450,714 bp 77.3 %	6 n 59,387,165 bp 94.9 %	5 n 33,829,439 bp 71.2 %	11 n 33,821,694 bp 70 %	125 n 142,670,497 bp 94 %	6 n 22,668,219 bp 45.5 %	1,657 n 2,827,897,959 bp 90.7 %
source	1 n 245,933,729 bp 100 %	1 n 246,757,187 bp 100 %	1 n 204,706,826 bp 100 %	1 n 196,955,443 bp 100 %	1 n 189,570,558 bp 100 %	1 n 182,825,514 bp 100 %	1 n 160,457,026 bp 100 %	1 n 148,433,235 bp 100 %	1 n 129,119,236 bp 100 %	1 n 138,509,278 bp 100 %	1 n 134,078,263 bp 100 %	1 n 134,180,708 bp 100 %	1 n 113,614,619 bp 100 %	1 n 105,387,636 bp 100 %	1 n 100,020,158 bp 100 %	1 n 93,247,744 bp 100 %	1 n 81,112,291 bp 100 %	1 n 80,862,209 bp 100 %	1 n 73,000,770 bp 100 %	1 n 62,587,170 bp 100 %	1 n 47,529,443 bp 100 %	1 n 48,321,704 bp 100 %	1 n 151,820,621 bp 100 %	1 n 49,868,224 bp 100 %	24 n 3,118,899,592 bp 100 %
tRNA	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 71 bp 3.88e-05 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 71 bp 2.28e-06 %
unsure	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	2 n 2 bp 1.09e-06 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 99 bp 0.000122 %	0 n 0 bp 0 %	2 n 180 bp 0.000247 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	5 n 281 bp 9.01e-06 %

Organism: Mosquito

# Features for mosquito from Ensembl Anopheles gambiae data , 11-June-2002

Chromosome > Feature	2L	2R	3L	3R	X	all
CDS	2,821 n 12,784,870 bp 26.7 %	3,768 n 15,923,111 bp 25.3 %	2,211 n 8,841,277 bp 20.6 %	2,698 n 12,487,616 bp 22.4 %	1,205 n 5,221,579 bp 23.8 %	12,703 n 55,258,453 bp 23.9 %
gene	2,821 n 12,784,870 bp 26.7 %	3,768 n 15,923,111 bp 25.3 %	2,211 n 8,841,277 bp 20.6 %	2,698 n 12,487,616 bp 22.4 %	1,208 n 46,299,936 bp 211 %	12,706 n 96,336,810 bp 41.6 %
repeat_region	27,807 n 3,621,053 bp 7.57 %	32,060 n 3,674,620 bp 5.85 %	23,578 n 3,036,029 bp 7.07 %	30,303 n 4,065,649 bp 7.29 %	22,398 n 2,781,562 bp 12.7 %	136,146 n 17,178,913 bp 7.42 %
source	1 n 47,863,459 bp 100 %	1 n 62,827,317 bp 100 %	1 n 42,949,055 bp 100 %	1 n 55,789,938 bp 100 %	1 n 21,978,341 bp 100 %	5 n 231,408,110 bp 100 %

Organism: Weed

# Features for weed from NCBI Genomes , 01-February-2002

Chromosome > Feature	1	2	3	4	5	all
CDS	6,761 n 13,759,740 bp 45.7 %	4,217 n 8,040,923 bp 40.9 %	5,253 n 9,986,004 bp 42.6 %	3,959 n 8,038,752 bp 45.8 %	5,988 n 11,656,422 bp 43.7 %	26,178 n 51,481,841 bp 43.8 %
gene	7,417 n 15,646,909 bp 52 %	4,743 n 9,577,060 bp 48.8 %	5,796 n 11,795,215 bp 50.3 %	4,064 n 8,548,521 bp 48.7 %	6,109 n 12,407,065 bp 46.5 %	28,129 n 57,974,770 bp 49.4 %
mRNA	6,762 n 14,740,461 bp 49 %	4,218 n 8,632,671 bp 43.9 %	5,254 n 10,709,542 bp 45.6 %	3,960 n 8,534,545 bp 48.6 %	5,990 n 12,402,819 bp 46.5 %	26,184 n 55,020,038 bp 46.9 %
misc_RNA	15 n 1,305 bp 0.00434 %	15 n 1,167 bp 0.00594 %	13 n 1,100 bp 0.00469 %	8 n 786 bp 0.00448 %	6 n 486 bp 0.00182 %	57 n 4,844 bp 0.00413 %
misc_feature	765 n 34,759,938 bp 116 %	511 n 21,951,236 bp 112 %	665 n 25,492,567 bp 109 %	385 n 19,776,557 bp 113 %	825 n 31,203,441 bp 117 %	3,151 n 133,183,739 bp 113 %
rRNA	0 n 0 bp 0 %	2 n 1,970 bp 0.01 %	2 n 1,970 bp 0.0084 %	0 n 0 bp 0 %	0 n 0 bp 0 %	4 n 3,940 bp 0.00336 %
source	1 n 30,080,808 bp 100 %	1 n 19,643,620 bp 100 %	1 n 23,465,811 bp 100 %	1 n 17,549,527 bp 100 %	1 n 26,689,407 bp 100 %	5 n 117,429,173 bp 100 %
tRNA	233 n 17,836 bp 0.0593 %	96 n 7,099 bp 0.0361 %	93 n 6,846 bp 0.0292 %	79 n 5,843 bp 0.0333 %	106 n 7,831 bp 0.0293 %	607 n 45,455 bp 0.0387 %

Organism: Worm

# Features for worm from WormBase GFF data , 26-April-2002

Chromosome > Feature	I	II	III	IV	V	X	all
CDS	3,006 n 10,231,529 bp 67.8 %	3,524 n 9,328,915 bp 61.5 %	2,778 n 9,217,013 bp 66.5 %	3,320 n 9,756,923 bp 55.8 %	4,962 n 11,799,563 bp 56.4 %	2,863 n 8,723,193 bp 49.1 %	20,453 n 59,057,136 bp 58.9 %
Expression	2,478 n 3,507,095 bp 23.3 %	3,068 n 4,122,086 bp 27.2 %	2,205 n 3,062,323 bp 22.1 %	2,737 n 3,807,629 bp 21.8 %	4,367 n 5,845,562 bp 27.9 %	2,484 n 3,474,729 bp 19.6 %	17,339 n 23,819,424 bp 23.8 %
Feature_data	465 n 67,391,940 bp 447 %	459 n 68,021,949 bp 448 %	426 n 61,892,739 bp 447 %	531 n 78,511,203 bp 449 %	633 n 93,960,681 bp 449 %	543 n 79,637,133 bp 449 %	3,057 n 449,415,645 bp 448 %
GenePair_STS	3,057 n 4,942,841 bp 32.8 %	3,652 n 5,309,130 bp 35 %	6,439 n 12,352,691 bp 89.2 %	3,304 n 4,994,146 bp 28.5 %	4,978 n 7,093,552 bp 33.9 %	2,849 n 4,509,263 bp 25.4 %	24,279 n 39,201,623 bp 39.1 %
Homol_data	463 n 15,428,909 bp 102 %	493 n 15,429,692 bp 102 %	397 n 14,174,476 bp 102 %	495 n 17,841,467 bp 102 %	705 n 21,141,860 bp 101 %	621 n 17,943,678 bp 101 %	3,174 n 101,960,082 bp 102 %
LTR	6 n 318 bp 0.00211 %	6 n 318 bp 0.0021 %	2 n 106 bp 0.000765 %	8 n 301 bp 0.00172 %	18 n 3,796 bp 0.0181 %	2 n 106 bp 0.000597 %	42 n 4,945 bp 0.00493 %
PCR_product	70 n 36,341 bp 0.241 %	57 n 32,967 bp 0.217 %	55 n 28,653 bp 0.207 %	64 n 28,466 bp 0.163 %	79 n 40,624 bp 0.194 %	76 n 36,625 bp 0.206 %	401 n 203,676 bp 0.203 %
RNAi	2,657 n 4,280,097 bp 28.4 %	350 n 1,005,967 bp 6.63 %	2,890 n 4,545,736 bp 32.8 %	398 n 1,241,683 bp 7.1 %	427 n 1,153,108 bp 5.51 %	441 n 1,217,403 bp 6.86 %	7,163 n 13,443,994 bp 13.4 %
Transposon_repeat	11 n 16,663 bp 0.11 %	14 n 20,795 bp 0.137 %	9 n 15,923 bp 0.115 %	18 n 24,763 bp 0.142 %	36 n 55,086 bp 0.263 %	12 n 19,504 bp 0.11 %	100 n 152,734 bp 0.152 %
allele	212 n 212 bp 0.00141 %	320 n 320 bp 0.00211 %	191 n 191 bp 0.00138 %	219 n 219 bp 0.00125 %	340 n 340 bp 0.00163 %	348 n 348 bp 0.00196 %	1,630 n 1,630 bp 0.00163 %
cDNA_for_RNAi	358 n 1,090,417 bp 7.23 %	338 n 989,327 bp 6.52 %	356 n 897,089 bp 6.47 %	385 n 1,218,884 bp 6.97 %	421 n 1,122,251 bp 5.37 %	431 n 1,195,239 bp 6.73 %	2,289 n 6,513,207 bp 6.5 %
gene	3,531 n 25,776,979 bp 171 %	4,110 n 24,999,606 bp 165 %	3,216 n 23,450,123 bp 169 %	3,929 n 27,772,820 bp 159 %	5,879 n 33,418,577 bp 160 %	3,556 n 26,979,371 bp 152 %	24,221 n 162,397,476 bp 162 %
insertion	31 n 4,527 bp 0.03 %	34 n 4,106 bp 0.0271 %	13 n 1,649 bp 0.0119 %	19 n 2,439 bp 0.0139 %	44 n 5,652 bp 0.027 %	44 n 5,805 bp 0.0327 %	185 n 24,178 bp 0.0241 %
inverted_repeat	5,825 n 1,753,454 bp 11.6 %	4,914 n 1,248,224 bp 8.23 %	5,581 n 1,478,364 bp 10.7 %	5,872 n 1,581,423 bp 9.04 %	6,205 n 1,786,322 bp 8.54 %	3,249 n 799,153 bp 4.5 %	31,646 n 8,646,940 bp 8.62 %
mRNA	3,060 n 10,287,609 bp 68.2 %	3,601 n 9,406,882 bp 62 %	2,814 n 9,250,120 bp 66.8 %	3,417 n 9,847,679 bp 56.3 %	5,152 n 12,061,744 bp 57.7 %	2,908 n 8,760,396 bp 49.4 %	20,952 n 59,614,430 bp 59.5 %
misc_feature	8 n 5,104 bp 0.0338 %	13 n 5,369 bp 0.0354 %	31 n 30,907 bp 0.223 %	4 n 4,572 bp 0.0261 %	3 n 1,543 bp 0.00738 %	8 n 10,056 bp 0.0567 %	67 n 57,551 bp 0.0574 %
misc_signal	5 n 5 bp 3.32e-05 %	1 n 1 bp 6.59e-06 %	1 n 1 bp 7.22e-06 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	7 n 7 bp 6.98e-06 %
misc_structure	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 16,989 bp 0.0812 %	0 n 0 bp 0 %	1 n 16,989 bp 0.0169 %
miscellaneous	9 n 9 bp 5.97e-05 %	20 n 20 bp 0.000132 %	20 n 20 bp 0.000144 %	7 n 83 bp 0.000474 %	16 n 6,938 bp 0.0332 %	10 n 3,990 bp 0.0225 %	82 n 11,060 bp 0.011 %
oligo	40 n 730 bp 0.00484 %	20 n 368 bp 0.00243 %	4,274 n 77,088 bp 0.556 %	22 n 396 bp 0.00226 %	6 n 108 bp 0.000516 %	14 n 252 bp 0.00142 %	4,376 n 78,942 bp 0.0787 %
partial_gene	1,794 n 6,582,064 bp 43.6 %	1,785 n 5,511,878 bp 36.3 %	1,691 n 6,185,566 bp 44.6 %	1,726 n 5,867,219 bp 33.5 %	1,833 n 5,459,081 bp 26.1 %	1,442 n 5,268,740 bp 29.7 %	10,271 n 34,874,548 bp 34.8 %
polyA_signal	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 5 bp 2.82e-05 %	1 n 5 bp 4.99e-06 %
polyA_site	2 n 3 bp 1.99e-05 %	0 n 0 bp 0 %	2 n 52 bp 0.000375 %	0 n 0 bp 0 %	0 n 0 bp 0 %	5 n 6 bp 3.38e-05 %	9 n 61 bp 6.08e-05 %
repeat	5,045 n 864,243 bp 5.73 %	5,143 n 888,584 bp 5.86 %	6,439 n 1,082,735 bp 7.81 %	3,712 n 745,002 bp 4.26 %	5,718 n 1,167,065 bp 5.58 %	2,564 n 496,015 bp 2.79 %	28,621 n 5,243,644 bp 5.23 %
repeat_family	4,248 n 1,052,714 bp 6.98 %	3,594 n 722,122 bp 4.76 %	4,496 n 982,399 bp 7.09 %	3,208 n 675,434 bp 3.86 %	4,242 n 976,263 bp 4.67 %	2,357 n 410,125 bp 2.31 %	22,145 n 4,819,057 bp 4.81 %
repeat_region	20 n 6,218 bp 0.0412 %	67 n 28,613 bp 0.189 %	16 n 10,639 bp 0.0768 %	32 n 9,981 bp 0.0571 %	39 n 16,073 bp 0.0768 %	21 n 31,757 bp 0.179 %	195 n 103,281 bp 0.103 %
repeat_unit	8 n 1,357 bp 0.009 %	0 n 0 bp 0 %	3 n 988 bp 0.00713 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 10 bp 5.63e-05 %	12 n 2,355 bp 0.00235 %
sequence	6 n 22,827,899 bp 151 %	4 n 22,546,607 bp 149 %	6 n 20,246,445 bp 146 %	3 n 26,267,944 bp 150 %	3 n 32,372,319 bp 155 %	5 n 24,693,238 bp 139 %	27 n 148,954,452 bp 149 %
source	1 n 15,080,474 bp 100 %	1 n 15,174,005 bp 100 %	1 n 13,855,083 bp 100 %	1 n 17,493,984 bp 100 %	1 n 20,916,336 bp 100 %	1 n 17,749,734 bp 100 %	6 n 100,269,616 bp 100 %
tRNA	71 n 5,218 bp 0.0346 %	64 n 4,787 bp 0.0315 %	71 n 5,342 bp 0.0386 %	82 n 6,017 bp 0.0344 %	153 n 12,076 bp 0.0577 %	304 n 22,435 bp 0.126 %	745 n 55,875 bp 0.0557 %
tandem_repeat	2,766 n 976,390 bp 6.47 %	2,713 n 914,383 bp 6.03 %	2,554 n 904,110 bp 6.53 %	2,319 n 721,286 bp 4.12 %	2,964 n 1,022,536 bp 4.89 %	1,233 n 371,145 bp 2.09 %	14,549 n 4,909,850 bp 4.9 %
trans-splice_acceptor	203 n 203 bp 0.00135 %	121 n 121 bp 0.000797 %	212 n 212 bp 0.00153 %	141 n 141 bp 0.000806 %	126 n 214 bp 0.00102 %	72 n 72 bp 0.000406 %	875 n 963 bp 0.00096 %
transcription	30 n 14,088 bp 0.0934 %	0 n 0 bp 0 %	8 n 1,399 bp 0.0101 %	0 n 0 bp 0 %	3 n 18,818 bp 0.09 %	0 n 0 bp 0 %	41 n 34,305 bp 0.0342 %
variation	863 n 863 bp 0.00572 %	983 n 983 bp 0.00648 %	770 n 770 bp 0.00556 %	893 n 893 bp 0.0051 %	1,332 n 1,332 bp 0.00637 %	873 n 873 bp 0.00492 %	5,714 n 5,714 bp 0.0057 %

Organism: Yeast

# Features for yeast from NCBI Genomes , 01-May-2002

Chromosome > Feature	I	II	III	IV	V	VI	VII	VIII	IX	X	XI	XII	XIII	XIV	XV	XVI	MT	all
CDS	105 n 146,213 bp 63.5 %	435 n 620,644 bp 76.3 %	174 n 224,372 bp 70.9 %	828 n 1,166,911 bp 76.2 %	289 n 401,888 bp 69.7 %	134 n 188,054 bp 69.6 %	573 n 808,104 bp 74.1 %	284 n 410,459 bp 73 %	215 n 317,190 bp 72.1 %	391 n 572,456 bp 76.8 %	338 n 491,361 bp 73.7 %	548 n 806,742 bp 74.8 %	493 n 713,438 bp 77.2 %	423 n 595,272 bp 75.9 %	576 n 805,232 bp 73.8 %	499 n 708,479 bp 74.7 %	28 n 72,028 bp 84 %	6,333 n 9,048,843 bp 74.4 %
LTR	9 n 2,619 bp 1.14 %	22 n 6,072 bp 0.747 %	19 n 5,403 bp 1.71 %	36 n 11,211 bp 0.732 %	35 n 22,457 bp 3.89 %	11 n 2,946 bp 1.09 %	44 n 12,813 bp 1.17 %	24 n 6,397 bp 1.14 %	10 n 3,135 bp 0.713 %	25 n 13,696 bp 1.84 %	14 n 4,200 bp 0.63 %	32 n 9,852 bp 0.914 %	24 n 7,222 bp 0.781 %	16 n 4,672 bp 0.596 %	32 n 9,083 bp 0.832 %	32 n 9,054 bp 0.955 %	0 n 0 bp 0 %	385 n 130,832 bp 1.08 %
gene	112 n 147,766 bp 64.2 %	448 n 621,624 bp 76.4 %	186 n 226,522 bp 71.5 %	857 n 1,169,554 bp 76.3 %	310 n 403,932 bp 70 %	144 n 188,879 bp 69.9 %	609 n 810,955 bp 74.3 %	295 n 411,326 bp 73.1 %	233 n 325,077 bp 73.9 %	415 n 574,285 bp 77 %	354 n 492,619 bp 73.9 %	570 n 808,813 bp 75 %	514 n 715,108 bp 77.4 %	438 n 601,660 bp 76.7 %	597 n 808,569 bp 74.1 %	518 n 713,130 bp 75.2 %	52 n 73,843 bp 86.1 %	6,652 n 9,093,662 bp 74.8 %
misc_RNA	1 n 101 bp 0.0439 %	2 n 1,387 bp 0.171 %	4 n 677 bp 0.214 %	3 n 475 bp 0.031 %	6 n 1,489 bp 0.258 %	0 n 0 bp 0 %	5 n 735 bp 0.0674 %	2 n 276 bp 0.0491 %	1 n 135 bp 0.0307 %	5 n 996 bp 0.134 %	4 n 644 bp 0.0966 %	7 n 1,715 bp 0.159 %	10 n 1,087 bp 0.118 %	4 n 684 bp 0.0872 %	10 n 2,467 bp 0.226 %	6 n 1,073 bp 0.113 %	0 n 0 bp 0 %	70 n 13,941 bp 0.115 %
misc_feature	1 n 138 bp 0.0599 %	1 n 116 bp 0.0143 %	1 n 116 bp 0.0366 %	1 n 111 bp 0.00725 %	1 n 153 bp 0.0265 %	1 n 118 bp 0.0437 %	1 n 118 bp 0.0108 %	1 n 117 bp 0.0208 %	1 n 117 bp 0.0266 %	1 n 116 bp 0.0156 %	1 n 114 bp 0.0171 %	1 n 119 bp 0.011 %	1 n 110 bp 0.0119 %	1 n 109 bp 0.0139 %	1 n 118 bp 0.0108 %	1 n 117 bp 0.0123 %	0 n 0 bp 0 %	16 n 1,907 bp 0.0157 %
rRNA	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	11 n 24,361 bp 2.26 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	5 n 5,441 bp 6.34 %	16 n 29,802 bp 0.245 %
rep_origin	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	10 n 3,065 bp 1.13 %	1 n 74 bp 0.00678 %	0 n 0 bp 0 %	1 n 223 bp 0.0507 %	1 n 488 bp 0.0655 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	2 n 690 bp 0.0632 %	0 n 0 bp 0 %	0 n 0 bp 0 %	15 n 4,540 bp 0.0373 %
repeat_region	1 n 5,924 bp 2.57 %	3 n 17,789 bp 2.19 %	2 n 9,101 bp 2.87 %	8 n 47,035 bp 3.07 %	2 n 11,649 bp 2.02 %	1 n 5,958 bp 2.21 %	6 n 35,015 bp 3.21 %	2 n 12,249 bp 2.18 %	1 n 5,427 bp 1.23 %	3 n 18,067 bp 2.42 %	0 n 0 bp 0 %	5 n 29,157 bp 2.7 %	4 n 23,653 bp 2.56 %	3 n 17,108 bp 2.18 %	4 n 23,756 bp 2.18 %	5 n 29,915 bp 3.16 %	0 n 0 bp 0 %	50 n 291,803 bp 2.4 %
snRNA	0 n 0 bp 0 %	1 n 1,174 bp 0.144 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 159 bp 0.0276 %	0 n 0 bp 0 %	2 n 393 bp 0.036 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	1 n 111 bp 0.0103 %	0 n 0 bp 0 %	1 n 667 bp 0.085 %	0 n 0 bp 0 %	0 n 0 bp 0 %	0 n 0 bp 0 %	6 n 2,504 bp 0.0206 %
source	1 n 230,202 bp 100 %	1 n 813,138 bp 100 %	1 n 316,612 bp 100 %	1 n 1,531,928 bp 100 %	1 n 576,868 bp 100 %	1 n 270,147 bp 100 %	1 n 1,090,936 bp 100 %	1 n 562,638 bp 100 %	1 n 439,884 bp 100 %	1 n 745,443 bp 100 %	1 n 666,444 bp 100 %	1 n 1,078,172 bp 100 %	1 n 924,429 bp 100 %	1 n 784,327 bp 100 %	1 n 1,091,283 bp 100 %	1 n 948,060 bp 100 %	1 n 85,778 bp 100 %	17 n 12,156,289 bp 100 %
tRNA	4 n 368 bp 0.16 %	13 n 980 bp 0.121 %	10 n 784 bp 0.248 %	28 n 2,233 bp 0.146 %	20 n 1,451 bp 0.252 %	10 n 825 bp 0.305 %	36 n 2,851 bp 0.261 %	11 n 867 bp 0.154 %	10 n 726 bp 0.165 %	24 n 1,829 bp 0.245 %	16 n 1,258 bp 0.189 %	21 n 1,769 bp 0.164 %	21 n 1,670 bp 0.181 %	14 n 1,138 bp 0.145 %	20 n 1,592 bp 0.146 %	17 n 1,321 bp 0.139 %	24 n 1,815 bp 2.12 %	299 n 23,477 bp 0.193 %

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