euGenes: Genome Features
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euGenes: Genome Sequence Features Summary Table

Common Features for all chromosomes

Count (n), base pair coverage (bp), and percent coverage (%) by features of genome sequences are given.
  Organism >
Feature
FruitflyWeedWormYeastAll
CDS0 n
0 bp
0 %
7,859 n
16,065,675 bp
43.2 %
19,098 n
52,391,589 bp
53.3 %
6,231 n
8,857,760 bp
72.9 %
33,188 n
LTR0 n
0 bp
0 %
84 n
39,474 bp
0.106 %
0 n
0 bp
0 %
385 n
130,847 bp
1.08 %
469 n
gene13,358 n
50,795,974 bp
43.7 %
8,339 n
17,333,689 bp
46.6 %
23,407 n
152,336,093 bp
155 %
6,538 n
8,892,095 bp
73.2 %
51,642 n
insertions2,839 n
2,839 bp
0.00244 %
0 n
0 bp
0 %
398 n
34,608 bp
0.0352 %
0 n
0 bp
0 %
3,237 n
mRNA14,057 n
55,623,252 bp
47.9 %
7,862 n
16,401,122 bp
44.1 %
19,551 n
53,185,155 bp
54.1 %
0 n
0 bp
0 %
41,470 n
misc_feature0 n
0 bp
0 %
21 n
71,465 bp
0.192 %
289 n
82,821 bp
0.0843 %
16 n
1,903 bp
0.0157 %
326 n
rRNA0 n
0 bp
0 %
3 n
5,318 bp
0.0143 %
0 n
0 bp
0 %
5 n
5,441 bp
0.0448 %
8 n
repeats30,192 n
4,152,219 bp
3.58 %
130 n
366,302 bp
0.985 %
60,484 n
18,898,930 bp
19.2 %
50 n
291,805 bp
2.4 %
90,856 n
source6 n
116,117,220 bp
100 %
2 n
37,197,171 bp
100 %
6 n
98,276,607 bp
100 %
17 n
12,155,009 bp
100 %
31 n
tRNA253 n
18,905 bp
0.0163 %
148 n
11,526 bp
0.031 %
724 n
54,609 bp
0.0556 %
298 n
23,395 bp
0.192 %
1,423 n

Common features include these feature name changes or groupings from organism names (name-pattern => common-name):
*insertion* => insertions
*repeat* => repeats

All Features for each organism, per chromosome


Organism: Fruitfly

# Features for fly from BDGP/Celera/FlyBase data , 02-September-2000
  Chromosome >
Feature
2L2R3L3R4Xall
cDNA1,998 n
547,715 bp
2.48 %
2,408 n
642,659 bp
3.18 %
2,160 n
604,098 bp
2.6 %
2,745 n
730,493 bp
2.63 %
106 n
27,098 bp
2.34 %
1,822 n
539,499 bp
2.49 %
11,239 n
3,091,562 bp
2.66 %
gap114 n
400,320 bp
1.81 %
117 n
333,346 bp
1.65 %
206 n
403,774 bp
1.74 %
188 n
300,945 bp
1.08 %
32 n
29,196 bp
2.53 %
654 n
443,350 bp
2.05 %
1,311 n
1,910,931 bp
1.65 %
gene2,391 n
8,435,344 bp
38.2 %
2,631 n
8,949,524 bp
44.2 %
2,596 n
8,904,500 bp
38.4 %
3,363 n
16,254,257 bp
58.5 %
84 n
560,386 bp
48.5 %
2,293 n
7,691,963 bp
35.5 %
13,358 n
50,795,974 bp
43.7 %
mRNA2,511 n
9,294,656 bp
42.1 %
2,772 n
10,081,399 bp
49.8 %
2,737 n
9,627,608 bp
41.5 %
3,538 n
17,594,080 bp
63.3 %
96 n
682,442 bp
59 %
2,403 n
8,343,067 bp
38.5 %
14,057 n
55,623,252 bp
47.9 %
p_insertion606 n
606 bp
0.00274 %
770 n
770 bp
0.00381 %
482 n
482 bp
0.00208 %
673 n
673 bp
0.00242 %
0 n
0 bp
0 %
308 n
308 bp
0.00142 %
2,839 n
2,839 bp
0.00244 %
repeat586 n
94,281 bp
0.427 %
5,550 n
874,300 bp
4.32 %
5,578 n
816,112 bp
3.52 %
6,526 n
838,463 bp
3.02 %
586 n
136,136 bp
11.8 %
11,366 n
1,392,927 bp
6.43 %
30,192 n
4,152,219 bp
3.58 %
source1 n
22,082,479 bp
100 %
1 n
20,234,167 bp
100 %
1 n
23,191,912 bp
100 %
1 n
27,784,436 bp
100 %
1 n
1,156,201 bp
100 %
1 n
21,668,025 bp
100 %
6 n
116,117,220 bp
100 %
tRNA0 n
0 bp
0 %
96 n
7,073 bp
0.035 %
50 n
3,766 bp
0.0162 %
81 n
6,069 bp
0.0218 %
0 n
0 bp
0 %
26 n
1,997 bp
0.00922 %
253 n
18,905 bp
0.0163 %

Organism: Weed

# Features for weed from NCBI Genomes , 23-April-2000
  Chromosome >
Feature
IIIVall
CDS4,036 n
7,865,444 bp
40 %
3,823 n
8,200,231 bp
46.7 %
7,859 n
16,065,675 bp
43.2 %
LTR0 n
0 bp
0 %
84 n
39,474 bp
0.225 %
84 n
39,474 bp
0.106 %
gene4,516 n
9,133,514 bp
46.5 %
3,823 n
8,200,175 bp
46.7 %
8,339 n
17,333,689 bp
46.6 %
mRNA4,039 n
8,193,301 bp
41.7 %
3,823 n
8,207,821 bp
46.8 %
7,862 n
16,401,122 bp
44.1 %
misc_feature0 n
0 bp
0 %
21 n
71,465 bp
0.407 %
21 n
71,465 bp
0.192 %
rRNA3 n
5,318 bp
0.0271 %
0 n
0 bp
0 %
3 n
5,318 bp
0.0143 %
repeat_region0 n
0 bp
0 %
130 n
366,302 bp
2.09 %
130 n
366,302 bp
0.985 %
snRNA2 n
388 bp
0.00197 %
4 n
902 bp
0.00514 %
6 n
1,290 bp
0.00347 %
source1 n
19,647,090 bp
100 %
1 n
17,550,081 bp
100 %
2 n
37,197,171 bp
100 %
tRNA73 n
5,370 bp
0.0273 %
75 n
6,156 bp
0.0351 %
148 n
11,526 bp
0.031 %

Organism: Worm

# Features for worm from WormBase GFF data , 02-September-2000
  Chromosome >
Feature
IIIIIIIVVXall
CDS2,767 n
8,719,639 bp
60.4 %
3,360 n
8,679,663 bp
57.1 %
2,408 n
7,619,288 bp
58.2 %
3,118 n
8,536,155 bp
50.1 %
4,787 n
11,077,017 bp
52.5 %
2,658 n
7,759,827 bp
44.6 %
19,098 n
52,391,589 bp
53.3 %
Transposon_Sequence1 n
3,228 bp
0.0224 %
0 n
0 bp
0 %
0 n
0 bp
0 %
2 n
1,909 bp
0.0112 %
1 n
1,010 bp
0.00479 %
4 n
4,698 bp
0.027 %
8 n
10,845 bp
0.011 %
gene3,360 n
23,298,941 bp
161 %
4,069 n
24,253,679 bp
160 %
2,892 n
20,716,151 bp
158 %
3,905 n
26,356,279 bp
155 %
5,825 n
32,682,508 bp
155 %
3,356 n
25,028,535 bp
144 %
23,407 n
152,336,093 bp
155 %
insertion44 n
6,997 bp
0.0485 %
89 n
5,439 bp
0.0358 %
38 n
5,772 bp
0.0441 %
37 n
2,775 bp
0.0163 %
78 n
6,687 bp
0.0317 %
112 n
6,938 bp
0.0399 %
398 n
34,608 bp
0.0352 %
inverted_repeat5,035 n
1,653,896 bp
11.5 %
4,357 n
1,362,939 bp
8.96 %
4,428 n
1,472,367 bp
11.2 %
5,358 n
1,637,067 bp
9.6 %
5,692 n
1,909,649 bp
9.06 %
2,875 n
800,913 bp
4.6 %
27,745 n
8,836,831 bp
8.99 %
mRNA2,815 n
8,810,202 bp
61 %
3,418 n
8,786,884 bp
57.8 %
2,427 n
7,644,132 bp
58.4 %
3,229 n
8,770,252 bp
51.4 %
4,978 n
11,373,142 bp
53.9 %
2,684 n
7,800,543 bp
44.8 %
19,551 n
53,185,155 bp
54.1 %
misc_feature65 n
5,109 bp
0.0354 %
41 n
5,020 bp
0.033 %
70 n
32,337 bp
0.247 %
40 n
4,683 bp
0.0275 %
49 n
21,620 bp
0.103 %
24 n
14,052 bp
0.0807 %
289 n
82,821 bp
0.0843 %
misc_signal1 n
1 bp
6.93e-06 %
2 n
2 bp
1.32e-05 %
2 n
2 bp
1.53e-05 %
8 n
8 bp
4.69e-05 %
5 n
5 bp
2.37e-05 %
2 n
2 bp
1.15e-05 %
20 n
20 bp
2.04e-05 %
misc_structure0 n
0 bp
0 %
1 n
317 bp
0.00208 %
0 n
0 bp
0 %
0 n
0 bp
0 %
1 n
16,989 bp
0.0806 %
0 n
0 bp
0 %
2 n
17,306 bp
0.0176 %
polyA_signal0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
1 n
5 bp
2.87e-05 %
1 n
5 bp
5.09e-06 %
polyA_site2 n
3 bp
2.08e-05 %
0 n
0 bp
0 %
2 n
52 bp
0.000397 %
0 n
0 bp
0 %
0 n
0 bp
0 %
5 n
6 bp
3.45e-05 %
9 n
61 bp
6.21e-05 %
repeat_family3,463 n
952,995 bp
6.6 %
3,147 n
821,933 bp
5.41 %
3,329 n
987,870 bp
7.54 %
2,896 n
721,956 bp
4.23 %
3,869 n
1,076,971 bp
5.11 %
2,134 n
436,956 bp
2.51 %
18,838 n
4,998,681 bp
5.09 %
repeat_region20 n
6,218 bp
0.0431 %
67 n
28,613 bp
0.188 %
16 n
10,639 bp
0.0813 %
32 n
9,981 bp
0.0585 %
41 n
16,670 bp
0.0791 %
21 n
31,757 bp
0.182 %
197 n
103,878 bp
0.106 %
repeat_unit8 n
1,357 bp
0.0094 %
0 n
0 bp
0 %
3 n
988 bp
0.00755 %
0 n
0 bp
0 %
0 n
0 bp
0 %
1 n
10 bp
5.74e-05 %
12 n
2,355 bp
0.0024 %
sequence6 n
15,540,309 bp
108 %
2 n
14,748,364 bp
97 %
5 n
16,605,878 bp
127 %
5 n
17,429,919 bp
102 %
3 n
22,911,987 bp
109 %
5 n
15,227,854 bp
87.5 %
26 n
102,464,311 bp
104 %
source1 n
14,435,322 bp
100 %
1 n
15,205,540 bp
100 %
1 n
13,093,963 bp
100 %
1 n
17,047,436 bp
100 %
1 n
21,085,421 bp
100 %
1 n
17,408,925 bp
100 %
6 n
98,276,607 bp
100 %
tRNA70 n
5,156 bp
0.0357 %
64 n
4,802 bp
0.0316 %
63 n
4,855 bp
0.0371 %
80 n
5,892 bp
0.0346 %
147 n
11,668 bp
0.0553 %
300 n
22,236 bp
0.128 %
724 n
54,609 bp
0.0556 %
tandem_repeat2,608 n
951,874 bp
6.59 %
2,591 n
941,510 bp
6.19 %
2,240 n
874,299 bp
6.68 %
2,187 n
721,477 bp
4.23 %
2,922 n
1,126,398 bp
5.34 %
1,144 n
341,627 bp
1.96 %
13,692 n
4,957,185 bp
5.04 %
variation0 n
0 bp
0 %
4 n
4 bp
2.63e-05 %
0 n
0 bp
0 %
0 n
0 bp
0 %
3 n
3 bp
1.42e-05 %
2 n
2 bp
1.15e-05 %
9 n
9 bp
9.16e-06 %

Organism: Yeast

# Features for yeast from NCBI Genomes , 23-April-2000
  Chromosome >
Feature
IIIIIIIVIXMTVVIVIIVIIIXXIXIIXIIIXIVXVXVIall
CDS106 n
146,686 bp
63.7 %
426 n
618,028 bp
76 %
171 n
220,417 bp
69.9 %
802 n
1,112,664 bp
72.6 %
219 n
317,975 bp
72.3 %
28 n
72,028 bp
84 %
283 n
397,468 bp
68.9 %
133 n
186,366 bp
69 %
562 n
779,957 bp
71.5 %
281 n
403,633 bp
71.7 %
386 n
571,222 bp
76.6 %
336 n
490,045 bp
73.5 %
540 n
787,396 bp
73 %
487 n
710,785 bp
76.9 %
416 n
586,113 bp
74.7 %
564 n
774,163 bp
70.9 %
491 n
682,814 bp
72 %
6,231 n
8,857,760 bp
72.9 %
LTR9 n
2,619 bp
1.14 %
22 n
6,072 bp
0.747 %
19 n
5,418 bp
1.72 %
36 n
11,211 bp
0.732 %
10 n
3,135 bp
0.713 %
0 n
0 bp
0 %
35 n
22,457 bp
3.89 %
11 n
2,946 bp
1.09 %
44 n
12,813 bp
1.17 %
24 n
6,397 bp
1.14 %
25 n
13,696 bp
1.84 %
14 n
4,200 bp
0.63 %
32 n
9,852 bp
0.914 %
24 n
7,222 bp
0.781 %
16 n
4,672 bp
0.596 %
32 n
9,083 bp
0.832 %
32 n
9,054 bp
0.955 %
385 n
130,847 bp
1.08 %
gene110 n
147,054 bp
63.9 %
439 n
619,008 bp
76.1 %
183 n
222,567 bp
70.6 %
831 n
1,115,307 bp
72.8 %
232 n
325,445 bp
74 %
52 n
73,843 bp
86.1 %
304 n
399,512 bp
69.3 %
143 n
187,191 bp
69.3 %
598 n
782,808 bp
71.8 %
292 n
404,500 bp
71.9 %
410 n
573,051 bp
76.9 %
352 n
491,303 bp
73.7 %
561 n
789,165 bp
73.2 %
508 n
712,455 bp
77.1 %
430 n
587,251 bp
74.9 %
585 n
777,500 bp
71.2 %
508 n
684,135 bp
72.2 %
6,538 n
8,892,095 bp
73.2 %
misc_RNA0 n
0 bp
0 %
3 n
2,561 bp
0.315 %
4 n
677 bp
0.215 %
2 n
377 bp
0.0246 %
1 n
135 bp
0.0307 %
0 n
0 bp
0 %
7 n
1,648 bp
0.286 %
0 n
0 bp
0 %
6 n
884 bp
0.081 %
2 n
276 bp
0.0491 %
5 n
998 bp
0.134 %
4 n
644 bp
0.0966 %
7 n
1,226 bp
0.114 %
9 n
999 bp
0.108 %
5 n
1,351 bp
0.172 %
10 n
2,467 bp
0.226 %
6 n
1,073 bp
0.113 %
71 n
15,316 bp
0.126 %
misc_feature1 n
138 bp
0.0599 %
1 n
116 bp
0.0143 %
1 n
112 bp
0.0355 %
1 n
111 bp
0.00725 %
1 n
117 bp
0.0266 %
0 n
0 bp
0 %
1 n
153 bp
0.0265 %
1 n
118 bp
0.0437 %
1 n
118 bp
0.0108 %
1 n
117 bp
0.0208 %
1 n
116 bp
0.0156 %
1 n
114 bp
0.0171 %
1 n
119 bp
0.011 %
1 n
110 bp
0.0119 %
1 n
109 bp
0.0139 %
1 n
118 bp
0.0108 %
1 n
117 bp
0.0123 %
16 n
1,903 bp
0.0157 %
rRNA0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
5 n
5,441 bp
6.34 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
0 n
0 bp
0 %
5 n
5,441 bp
0.0448 %
repeat_region1 n
5,924 bp
2.57 %
3 n
17,789 bp
2.19 %
2 n
9,103 bp
2.89 %
8 n
47,035 bp
3.07 %
1 n
5,427 bp
1.23 %
0 n
0 bp
0 %
2 n
11,649 bp
2.02 %
1 n
5,958 bp
2.21 %
6 n
35,015 bp
3.21 %
2 n
12,249 bp
2.18 %
3 n
18,067 bp
2.42 %
0 n
0 bp
0 %
5 n
29,157 bp
2.7 %
4 n
23,653 bp
2.56 %
3 n
17,108 bp
2.18 %
4 n
23,756 bp
2.18 %
5 n
29,915 bp
3.16 %
50 n
291,805 bp
2.4 %
source1 n
230,202 bp
100 %
1 n
813,139 bp
100 %
1 n
315,338 bp
100 %
1 n
1,531,928 bp
100 %
1 n
439,884 bp
100 %
1 n
85,778 bp
100 %
1 n
576,868 bp
100 %
1 n
270,147 bp
100 %
1 n
1,090,935 bp
100 %
1 n
562,638 bp
100 %
1 n
745,439 bp
100 %
1 n
666,444 bp
100 %
1 n
1,078,171 bp
100 %
1 n
924,429 bp
100 %
1 n
784,327 bp
100 %
1 n
1,091,282 bp
100 %
1 n
948,060 bp
100 %
17 n
12,155,009 bp
100 %
tRNA4 n
368 bp
0.16 %
13 n
980 bp
0.121 %
10 n
784 bp
0.249 %
27 n
2,151 bp
0.14 %
10 n
726 bp
0.165 %
24 n
1,815 bp
2.12 %
20 n
1,451 bp
0.252 %
10 n
825 bp
0.305 %
36 n
2,851 bp
0.261 %
11 n
867 bp
0.154 %
24 n
1,829 bp
0.245 %
16 n
1,258 bp
0.189 %
21 n
1,769 bp
0.164 %
21 n
1,670 bp
0.181 %
14 n
1,138 bp
0.145 %
20 n
1,592 bp
0.146 %
17 n
1,321 bp
0.139 %
298 n
23,395 bp
0.192 %


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